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Leadership Meet the Administrative Team Departments and Units Aute et fugiat ad est cupidatat esse laborum dolor ex anim anim cillum cillum exercitation culpa. Our Experts Aute et fugiat ad est cupidatat esse laborum dolor ex anim anim cillum cillum exercitation culpa.State Administration Get contact information for Extension administrative personnel by operational area and their respective support personnel. Area Extension Directors Get contact information for the Area Extension Directors (AEDs) County Extension Personnel Aute et fugiat ad est cupidatat esse laborum dolor ex anim anim cillum cillum exercitation culpa.
Julian Dupuis
Regular Faculty
Associated Departments
Scholars@UK
Increasing pasture diet diversity in broiler chickens: Insights from DNA metabarcoding
Thongjued, K., Garcia, K., Halmos, V., Pulliam, K., Gonthier, D. J. & Dupuis, J., May 14 2025, In: Renewable Agriculture and Food Systems. 40, e13.Research output: Contribution to journal › Article › peer-review
Whole-Genome Evaluation of Genetic Rescue: The Case of a Curiously Isolated and Endangered Butterfly
MacDonald, Z. G., Dupuis, J. R., Glasier, J. R. N., Sissons, R., Moehrenschlager, A., Shaffer, H. B. & Sperling, F. A. H., Feb 2025, In: Molecular Ecology. 34, 4, e17657.Research output: Contribution to journal › Article › peer-review
CCS-Consensuser: A Haplotype-Aware Consensus Generator for PacBio Amplicon Sequences
Congrains, C., Bremer, F., Dupuis, J. R., Barr, N. B., Garzón-Orduña, I. J., Rubinoff, D., Doorenweerd, C., Jose, M. S., Morris, K., Kauwe, A. & Geib, S., 2025, (Accepted/In press) In: Molecular Ecology Resources.Research output: Contribution to journal › Article › peer-review
A cryptic new species of tiger swallowtail (Lepidoptera, Papilionidae) from eastern North America
Deroller, C. J., Wang, X., Dupuis, J. R. & Schmidt, B. C., 2025, In: ZooKeys. 1228, p. 69-97 29 p.Research output: Contribution to journal › Article › peer-review
Towards a better future for DNA barcoding: Evaluating monophyly- and distance-based species identification using COI gene fragments of Dacini fruit flies
Doorenweerd, C., San Jose, M., Leblanc, L., Barr, N., Geib, S. M., Chung, A. Y. C., Dupuis, J. R., Ekayanti, A., Fiegalan, E., Hemachandra, K. S., Aftab Hossain, M., Huang, C. L., Hsu, Y. F., Morris, K. Y., Maryani A. Mustapeng, A., Niogret, J., Pham, T. H., Thi Nguyen, N., Sirisena, U. G. A. I. & Todd, T. & 1 others, , Aug 2024, In: Molecular Ecology Resources. 24, 6, e13987.Research output: Contribution to journal › Article › peer-review
snpAIMeR: R package for evaluating ancestry informative marker contributions in non-model population diagnostics
Vertacnik, K. L., Vernygora, O. V. & Dupuis, J. R., Jun 1 2024, In: Bioinformatics. 40, 6, btae377.Research output: Contribution to journal › Article › peer-review
Variation in RNA interference sensitivity in the southern pine beetle, Dendroctonus frontalis (Coleoptera: Curculionidae)
Kyre, B. R., Dupuis, J., Zúñiga, G. & Rieske, L. K., Jun 1 2024, In: Biological Journal of the Linnean Society. 142, 2, p. 147-154 8 p.Research output: Contribution to journal › Article › peer-review
DNA metabarcoding diet analysis in a generalist omnivore: feeding trials reveal the efficacy of extraction kits and a multi-locus approach for identifying diverse diets
Thongjued, K., Garcia, K., Scott, D., Gonthier, D. J. & Dupuis, J. R., Sep 2024, In: Integrative Zoology. 19, 5, p. 790-806 17 p.Research output: Contribution to journal › Article › peer-review
Toward transparent taxonomy: an interactive web-tool for evaluating competing taxonomic arrangements
Vernygora, O. V., Sperling, F. A. H. & Dupuis, J. R., Apr 2024, In: Cladistics. 40, 2, p. 181-191 11 p.Research output: Contribution to journal › Article › peer-review
Biology and management of Ceutorhynchus obstrictus (Coleoptera: Curculionidae) in spring-planted canola on the Northern Great Plains
Hussain, A., Mittapelly, P., Blake, A. J., Dupuis, J. R., Bouchard, P., Skolrud, T. D., Keddie, B. A., Vankosky, M. A., Cárcamo, H. A. & Mori, B. A., 2023, In: Journal of Integrated Pest Management. 14, 1, 17.Research output: Contribution to journal › Article › peer-review
Interspecific gene flow obscures phylogenetic relationships in an important insect pest species complex
San Jose, M., Doorenweerd, C., Geib, S., Barr, N., Dupuis, J. R., Leblanc, L., Kauwe, A., Morris, K. Y. & Rubinoff, D., Nov 2023, In: Molecular Phylogenetics and Evolution. 188, 107892.Research output: Contribution to journal › Article › peer-review
Phylogenomic analysis provides diagnostic tools for the identification of Anastrepha fraterculus (Diptera: Tephritidae) species complex
Congrains, C., Dupuis, J. R., Rodriguez, E. J., Norrbom, A. L., Steck, G., Sutton, B., Nolazco, N., de Brito, R. A. & Geib, S. M., Sep 2023, In: Evolutionary Applications. 16, 9, p. 1598-1618 21 p.Research output: Contribution to journal › Article › peer-review
Recent co-evolution of two pandemic plant diseases in a multi-hybrid swarm
Rahnama, M., Condon, B., Ascari, J. P., Dupuis, J. R., Del Ponte, E. M., Pedley, K. F., Martinez, S., Valent, B. & Farman, M. L., Dec 2023, In: Nature Ecology and Evolution. 7, 12, p. 2055-2066 12 p.Research output: Contribution to journal › Article › peer-review
A comprehensive phylogeny and revised taxonomy illuminate the origin and diversification of the global radiation of Papilio (Lepidoptera: Papilionidae)
Condamine, F. L., Allio, R., Reboud, E. L., Dupuis, J. R., Toussaint, E. F. A., Mazet, N., Hu, S. J., Lewis, D. S., Kunte, K., Cotton, A. M. & Sperling, F. A. H., Jun 2023, In: Molecular Phylogenetics and Evolution. 183, 107758.Research output: Contribution to journal › Article › peer-review
HiMAP2: Identifying phylogenetically informative genetic markers from diverse genomic resources
Vernygora, O. V., Congrains, C., Geib, S. M. & Dupuis, J. R., Jul 2023, In: Molecular Ecology Resources. 23, 5, p. 1155-1167 13 p.Research output: Contribution to journal › Article › peer-review
Impact of climate change on the elevational and latitudinal distributions of populations of Tipulidae (Diptera) in Wales, United Kingdom
Devlin, J. J., Thomas, R. J., Long, S. E., Boardman, P. & Dupuis, J. R., Sep 1 2022, In: Biological Journal of the Linnean Society. 137, 1, p. 30-46 17 p.Research output: Contribution to journal › Article › peer-review
The longhorn beetles (Coleoptera: Cerambycidae) of Kentucky with notes on larval hosts, adult nectar use, and semiochemical attraction
Chapman, E. G., Richards, A. B. & Dupuis, J. R., Jan 18 2023, In: Zootaxa. 5229, 1, p. 1-89 89 p.Research output: Contribution to journal › Article › peer-review
A phylogenomic approach to species delimitation in the mango fruit fly (Bactrocera frauenfeldi) complex: A new synonym of an important pest species with variable morphotypes (Diptera: Tephritidae)
Doorenweerd, C., San Jose, M., Geib, S., Dupuis, J., Leblanc, L., Barr, N., Fiegalan, E., Morris, K. Y. & Rubinoff, D., Jan 2023, In: Systematic Entomology. 48, 1, p. 10-22 13 p.Research output: Contribution to journal › Article › peer-review
Gauging ages of tiger swallowtail butterflies using alternate SNP analyses
Vernygora, O. V., Campbell, E. O., Grishin, N. V., Sperling, F. A. H. & Dupuis, J. R., Jun 2022, In: Molecular Phylogenetics and Evolution. 171, 107465.Research output: Contribution to journal › Article › peer-review
Genomic Data Support the Elevation of the Federally Listed El Segundo Blue (Euphilotes bernardino/Battoides allyni) to Species Status
Rubinoff, D., Longcore, T., Dupuis, J. R. & Osborne, K. H., Jun 1 2021, In: Journal of the Lepidopterists' Society. 75, 2, p. 161-164 4 p.Research output: Contribution to journal › Article › peer-review
Fellowship for Kim Vertacnik: Translating Genomics Into Effective Pest Management: Expanding Access To Bioinformatic Resources For Species Identification And Pathway Analysis
Vertacnik, K. (PI) & Dupuis, J. (CoI)
National Institute of Food and Agriculture
9/1/23 → 6/30/24
Project: Research project
Fellowship for Kristie Schmidt: Exploring Microbiome Diversity Analysis for Estimating the Geographic Origin of an Invasive Pest
Dupuis, J. (PI)
National Institute of Food and Agriculture
6/1/23 → 5/31/26
Project: Research project
Population Genomics, Diagnostic Strain Determination, and SIT Characterization for the Mexican Fruit Fly Anastrepha Ludens
Dupuis, J. (PI)
Animal and Plant Health Inspection Service
9/30/22 → 9/29/24
Project: Research project
Evaluation of a Leatherjacket, A New Pest of Alfalfa
Villanueva, R. (PI) & Dupuis, J. (CoI)
North Carolina State University
4/1/22 → 3/31/23
Project: Research project
Population Genomics, Diagnostic Strain Determination, and SIT Characterization for the Mexican Fruit Fly Anastrepha Ludens
Dupuis, J. (PI)
Animal and Plant Health Inspection Service
9/30/21 → 9/29/23
Project: Research project
Population Genomics, Diagnostic Strain Determination, and SIT Characterization for the Mexican Fruit Fly Anastrepha ludens
Dupuis, J. (PI)
Animal and Plant Health Inspection Service
9/30/20 → 9/29/22
Project: Research project
Developing Phylogenomic-Based Diagnostic Tools for Species Identification Across Diptera
Dupuis, J. (PI)
National Institute of Food and Agriculture
7/1/20 → 6/30/26
Project: Research project