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Leadership Meet the Administrative Team Departments and Units Aute et fugiat ad est cupidatat esse laborum dolor ex anim anim cillum cillum exercitation culpa. Our Experts Aute et fugiat ad est cupidatat esse laborum dolor ex anim anim cillum cillum exercitation culpa.State Administration Get contact information for Extension administrative personnel by operational area and their respective support personnel. Area Extension Directors Get contact information for the Area Extension Directors (AEDs) County Extension Personnel Aute et fugiat ad est cupidatat esse laborum dolor ex anim anim cillum cillum exercitation culpa.
Mark Farman
Regular Faculty
Associated Departments
Scholars@UK
Chemotypic diversity of bioprotective grass endophytes based on genome analyses, with new insights from a Mediterranean-climate region in Isfahan Province, Iran
Schardl, C. L., Florea, S., Nagabhyru, P., Pan, J., Farman, M. L., Young, C. A., Rahnama, M., Leuchtmann, A., Sabzalian, M. R., Torkian, M., Mirlohi, A. & Iannone, L. J., 2025, In: Mycologia. 117, 1, p. 34-59 26 p.Research output: Contribution to journal › Article › peer-review
Pyricularia Are Mostly Host-Specialized with Limited Reciprocal Cross-Infection Between Wheat and Endemic Grasses in Minas Gerais, Brazil
Ascari, J. P., Cazón, L. I., Rahnama, M., Lamour, K., Fernandes, J. M. C., Farman, M. L. & Del Ponte, E. M., Jan 2024, In: Phytopathology. 114, 1, p. 226-240 15 p.Research output: Contribution to journal › Article › peer-review
A Reevaluation of Phylogenomic Data Reveals that Current Understanding in Wheat Blast Population Biology and Epidemiology Is Obfuscated by Oversights in Population Sampling
Farman, M. L., Ascari, J. P., Rahnama, M., Del Ponte, E. M., Pedley, K. F., Martinez, S., Fernandes, J. M. C. & Valent, B., Jan 2024, In: Phytopathology. 114, 1, p. 220-225 6 p.Research output: Contribution to journal › Article › peer-review
Recent co-evolution of two pandemic plant diseases in a multi-hybrid swarm
Rahnama, M., Condon, B., Ascari, J. P., Dupuis, J. R., Del Ponte, E. M., Pedley, K. F., Martinez, S., Valent, B. & Farman, M. L., Dec 2023, In: Nature Ecology and Evolution. 7, 12, p. 2055-2066 12 p.Research output: Contribution to journal › Article › peer-review
Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2016: bioinformatics: Burns, TN, USA. April 21-23, 2017.
Rouchka, E. C., Chariker, J. H., Tieri, D., Park, J. W., Rajurkar, S. D., Singh, V., Verma, N. K., Cui, Y., Farman, M. L., Condon, B., Moore, N., Jaromczyk, J. W., Jaromczyk, J., Harris, D. R., Calie, P., Shin, E. K., Davis, R. L., Shaban-Nejad, A., Mitchell, J. M. & Flight, R. M. & 23 others, , 2017, In: BMC Bioinform.. 18, S-9, S-9.Research output: Contribution to journal › Article › peer-review
Identification of Septoria glycines Isolates from Soybean with Resistance to Quinone Outside Inhibitor Fungicides
Neves, D. L., Wang, A., Weems, J. D., Kelly, H. M., Mueller, D. S., Farman, M. & Bradley, C. A., Oct 2022, In: Plant Disease. 106, 10, p. 2631-2637 7 p.Research output: Contribution to journal › Article › peer-review
Targeted Cloning of Fungal Telomeres
Farman, M. L., 2011, Methods in Molecular Biology. p. 11-31 21 p. (Methods in Molecular Biology; vol. 722).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
Effector Genes in Magnaporthe oryzae Triticum as Potential Targets for Incorporating Blast Resistance in Wheat
Navia-Urrutia, M., Mosquera, G., Ellsworth, R., Farman, M., Trick, H. N. & Valent, B., Jun 2022, In: Plant Disease. 106, 6, p. 1700-1712 13 p.Research output: Contribution to journal › Article › peer-review
Telomere Roles in Fungal Genome Evolution and Adaptation
Rahnama, M., Wang, B., Dostart, J., Novikova, O., Yackzan, D., Yackzan, A., Bruss, H., Baker, M., Jacob, H., Zhang, X., Lamb, A., Stewart, A., Heist, M., Hoover, J., Calie, P., Chen, L., Liu, J. & Farman, M. L., Aug 9 2021, In: Frontiers in Genetics. 12, 676751.Research output: Contribution to journal › Article › peer-review
Recovery Plan for Wheat Blast Caused by Magnaporthe oryzae Pathotype Triticum
Valent, B., Cruppe, G., Stack, J. P., Cruz, C. D., Farman, M. L., Paul, P. A., Peterson, G. L. & Pedley, K. F., 2021, In: Plant Health Progress. 22, 2, p. 182-212 31 p.Research output: Contribution to journal › Article › peer-review
Diversity and cross-infection potential of colletotrichum causing fruit rots in mixed-fruit orchards in kentucky
Eaton, M. J., Edwards, S., Inocencio, H. A., Machado, F. J., Nuckles, E. M., Farman, M., Gauthier, N. A. & Vaillancourt, L. J., Apr 2021, In: Plant Disease. 105, 4, p. 1115-1128 14 p.Research output: Contribution to journal › Article › peer-review
First report of the blast pathogen, pyricularia oryzae, on eragrostis tef in the United States
Rahnama, M., Phillips, T. D. & Farman, M. L., Dec 2020, In: Plant Disease. 104, 12, p. 3266 1 p.Research output: Contribution to journal › Comment/debate
MAGGY, a retrotransposon in the genome of the rice blast fungus Magnaporthe grisea
Farman, M. L., Tosa, Y., Nitta, N. & Leong, S. A., 1996, In: Molecular and General Genetics. 251, 6, p. 665-674 10 p.Research output: Contribution to journal › Article › peer-review
Development of a high throughput transformation system for insertional mutagenesis in Magnaporthe oryzae
Betts, M. F., Tucker, S. L., Galadima, N., Meng, Y., Patel, G., Li, L., Donofrio, N., Floyd, A., Nolin, S., Brown, D., Mandel, M. A., Mitchell, T. K., Xu, J. R., Dean, R. A., Farman, M. L. & Orbach, M. J., Oct 2007, In: Fungal Genetics and Biology. 44, 10, p. 1035-1049 15 p.Research output: Contribution to journal › Article › peer-review
Correction to: A comparative genomic analysis of putative pathogenicity genes in the host-specific sibling species Colletotrichum graminicola and Colletotrichum sublineola (BMC Genomics (2017) 18 (67) DOI: 10.1186/s12864-016-3457-9)
Buiate, E. A. S., Xavier, K. V., Moore, N., Torres, M. F., Farman, M. L., Schardl, C. L. & Vaillancourt, L. J., Sep 19 2018, In: BMC Genomics. 19, 1, 686.Research output: Contribution to journal › Comment/debate
Analysis of the structure of the AVR1-CO39 avirulence locus in virulent rice-infecting isolates of Magnaporthe grisea
Farman, M. L., Eto, Y., Nakao, T., Tosa, Y., Nakayashiki, H., Mayama, S. & Leong, S. A., 2002, In: Molecular Plant-Microbe Interactions. 15, 1, p. 6-16 11 p.Research output: Contribution to journal › Article › peer-review
Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)
Stajich, J. E., Wilke, S. K., Ahrén, D., Au, C. H., Birren, B. W., Borodovsky, M., Burns, C., Canbäck, B., Casselton, L. A., Cheng, C. K., Deng, J., Dietrich, F. S., Fargo, D. C., Farman, M. L., Gathman, A. C., Goldberg, J., Guigó, R., Hoegger, P. J., Hooker, J. B. & Huggins, A. & 29 others, , Jun 29 2010, In: Proceedings of the National Academy of Sciences of the United States of America. 107, 26, p. 11889-11894 6 p.Research output: Contribution to journal › Article › peer-review
The rice blast story: From genome sequence to function
Dean, R. A., Mitchell, T., Kulkarni, R., Donofrio, N., Powell, A., Oh, Y. Y., Diener, S., Pan, H., Brown, D., Deng, J., Carbone, I., Ebbole, D. J., Thon, M., Farman, M. L., Orbach, M. J., Soderlund, C., Xu, J. R., Lee, Y. H., Talbot, N. J. & Coughlan, S. & 2 others, , Jan 1 2008, Exploitation of Fungi: Symposium of the British Mycological Society Held at the University of Manchester September 2005. p. 10-22 13 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
Overexpression of the Victoriocin Gene in Helminthosporium (Cochliobolus) victoriae enhances the antifungal activity of culture filtrates
De Sá, P. B., Li, H., Havens, W. M., Farman, M. L. & Ghabrial, S. A., Sep 2010, In: Phytopathology. 100, 9, p. 890-896 7 p.Research output: Contribution to journal › Article › peer-review
Gene flow between divergent cereal- and grass-specific lineages of the rice blast fungus Magnaporthe oryzae
Gladieux, P., Condon, B., Ravel, S., Soanes, D., Maciel, J. L. N., Nhani, A., Chen, L., Terauchi, R., Lebrun, M. H., Tharreau, D., Mitchell, T., Pedley, K. F., Valent, B., Talbot, N. J., Farman, M. & Fournier, E., Jan 1 2018, In: mBio. 9, 1, e01219-17.Research output: Contribution to journal › Article › peer-review
NGS Workshop: IDeA Networks of Biomedical Research Excellence in Kentucky
Farman, M. (PI) & Moore, N. (CoI)
5/1/24 → 4/30/25
Project: Research project
PADS Hub: IDeA Networks of Biomedical Research Excellence in Kentucky
Thompson, K. (PI), Balk, J. (CoI), Farman, M. (CoI), Hawk, G. (CoI), Mirabito, P. (CoI), Moore, N. (CoI) & Slone, S. (CoI)
5/1/24 → 4/30/25
Project: Research project
Selective Forces Impacting Fusarium Graminearum Species Causing Gibberella Ear Rot in Maize
Vaillancourt, L. (PI), Farman, M. (CoI) & Wise, K. (CoI)
National Institute of Food and Agriculture
7/1/24 → 6/30/28
Project: Research project
IDeA Networks of Biomedical Research Excellence in Kentucky
Thompson, K. (PI), Balk, J. (CoI), Farman, M. (CoI), Jaromczyk, J. (CoI), Mirabito, P. (CoI), Rayens, W. (Former PI) & Stromberg, A. (Former PI)
5/1/20 → 4/30/24
Project: Research project
Genomics of the Fusiform Rust and Brown Spot Needle Blight Systems
Farman, M. (PI)
8/22/23 → 7/6/26
Project: Research project
IDeA Networks of Biomedical Research Excellence in Kentucky
Stromberg, A. (PI), Farman, M. (CoI), Jaromczyk, J. (CoI), Mirabito, P. (CoI) & Thompson, K. (CoI)
5/1/20 → 4/30/23
Project: Research project
High-throughput screening for fast neutron-induced mutations in the tobacco CBT-ol synthase gene using Illumina amplicon sequencing
Zaitlin, D. (PI), Farman, M. (CoI), Miller, R. (CoI), Wagner, G. (CoI) & Yuan, L. (CoI)
9/12/13 → 9/11/20
Project: Research project
Participant Support:Telomere Roles in Fungal Genome Evolution and Adaptation
Farman, M. (PI), Jaromczyk, J. (CoI) & Condon, B. (Former CoI)
7/15/17 → 6/30/23
Project: Research project
REU: Telomere Hypervariability in the Fungus, Magnaporthe Oryzae - A Model Plant Pathogen
Farman, M. (PI)
5/16/11 → 3/31/12
Project: Research project
Telomere Hypervariability in the Fungus, Magnaporthe Oryzae - A Model Plant Pathogen
Farman, M. (PI)
4/1/07 → 3/31/12
Project: Research project
Scope C: Whole Genome Analysis of Pathogen-Host Recognition and Subsequent Responses in the Rice Blast Patho-System -- REU Supplement
Farman, M. (PI)
North Carolina State University
5/16/05 → 9/30/05
Project: Research project
Whole Genome Analysis of Pathogen-Host Recognition and Subsequent Responses in the Rice Blast Pathyo-System.
Farman, M. (PI)
North Carolina State University
6/1/04 → 9/30/05
Project: Research project
REU: Whole Genome Analysis of Pathogen-Host Recognition and Subsequent Responses in the Rice Blast Patho-System
Farman, M. (PI)
North Carolina State University
10/1/01 → 9/30/04
Project: Research project
REU Supplement - Comparative Genomics of Telomeres in Pathogenic and Saprophytic Fungi
Farman, M. (PI)
10/1/01 → 9/30/03
Project: Research project
IDeA Networks of Biomedical Research Excellence in Kentucky
Stromberg, A. (PI), Farman, M. (CoI), Jaromczyk, J. (CoI), Mirabito, P. (CoI) & Thompson, K. (CoI)
5/1/20 → 4/30/22
Project: Research project
Localization of secreted proteins during penetration and invasive growth of the rice blast fungus Magnaporthe oryzae
Farman, M. (PI) & Goodin, M. (CoI)
Cooperative State Research Education and Extension
2/1/08 → 1/31/12
Project: Research project
Telomere Hypervariability in the fungus, Magnaporthe oryzae - a model plant pathogen
Farman, M. (PI)
4/1/07 → 3/31/12
Project: Research project
KSEF R&D Excellence: Protein secretion by fungal pathogens: delivery into the host cell cytoplasm
Farman, M. (PI) & Goodin, M. (CoI)
KY Science and Technology Co Inc
11/1/05 → 6/30/07
Project: Research project
Genome of Epichloe Festucae, a Model Endophyte of Grasses
Schardl, C. (PI) & Farman, M. (CoI)
10/1/05 → 9/30/08
Project: Research project
Acquisition of a Laser Scanning Confocal Microscope for Plant Science Research
Nagy, P. (PI), Farman, M. (CoI), Goodin, M. (CoI) & Perry, S. (CoI)
5/1/05 → 4/30/08
Project: Research project